Thursday, May 27, 2010

How to Publish a Scientific Comment in 123 Easy Steps

How to Publish a Scientific Comment

in 12 3 Easy Steps

Prof. Rick Trebino

Georgia Institute of Technology

School of Physics

Atlanta, GA 30332

rick.trebino@physics.gatech.edu



The essence of science is reasoned debate. So, if you disagree with

something reported in a scientific paper, you can write a “Comment”

on it.

Yet you don’t see many Comments.

Some believe that this is because journal editors are reluctant to

publish Comments because Comments reveal their mistakes—papers

they shouldn’t have allowed to be published in the first place. Indeed,

scientists often complain that it can be very difficult to publish one.

Fortunately, in this article, I’ll share with you my recent experience

publishing a Comment, so you can, too. There are just a few simple

steps:

1. Read a paper that has a mistake in it.

2. Write and submit a Comment, politely correcting the mistake.

3. Enjoy your Comment in print along with the authors’ equally

polite Reply, basking in the joy of having participated in the

glorious scientific process and of the new friends you’ve made—

the authors whose research you’ve greatly assisted.

Ha ha! You didn’t really believe that, did you? Here’s the actual

sequence of events:

1. Read a paper in the most prestigious journal in your field that

“proves” that your entire life’s work is wrong.

2. Realize that the paper is completely wrong, its conclusions

based entirely on several misconceptions. It also claims that an

approach you showed to be fundamentally impossible is

preferable to one that you pioneered in its place and that

actually works. And among other errors, it also includes a

serious miscalculation—a number wrong by a factor of about

1000—a fact that’s obvious from a glance at the paper’s main

figure.

3. Decide to write a Comment to correct these mistakes—the

option conveniently provided by scientific journals precisely for

such situations.

4. Prepare for the writing of your Comment by searching the

journal for all previous Comments, finding about a dozen in the

last decade.

5. Note that almost all such Comments were two to three pages

long, like the other articles in the journal.

6. Prepare further by writing to the authors of the incorrect paper,

politely asking for important details they neglected to provide in

their paper.

7. Receive no response.

8. Persuade a graduate student to write to the authors of the

incorrect paper, politely asking for the important details they

neglected to provide in their paper.

9. Receive no response.

10. Persuade a colleague to write to the authors of the incorrect

paper, politely asking for the important details they neglected to

provide in their paper.

11. Receive no response.

12. Persuade your colleague to ask a friend to write to the authors

of the incorrect paper, politely asking for the important details

they neglected to provide in their paper.

13. Receive no response.

14. Ask the graduate student to estimate these parameters herself,

and observe that she does a very good job of it, reproducing

their plots very accurately and confirming that the authors were

wrong by a factor of about 1000 and that their conclusions were

also wrong.

15. Write a Comment, politely explaining the authors’

misconceptions and correcting their miscalculation, including

illustrative figures, important equations, and simple

explanations of perhaps how they got it wrong, so others won’t

make the same mistake in the future.

16. Submit your Comment.

17. Wait two weeks.

18. Receive a response from the journal, stating that your Comment

is 2.39 pages long. Unfortunately, Comments can be no more

than 1.00 pages long, so your Comment cannot be considered

until it is shortened to less than 1.00 pages long.

19. Take a look at the journal again, and note that the title, author

list, author addresses, submission date, database codes,

abstract, references, and other administrative text occupy about

half a page, leaving only half a page for actual commenting in

your Comment.

20. Remove all unnecessary quantities such as figures, equations,

and explanations. Also remove mention of some of the authors’

numerous errors, for which there is now no room in your

Comment; the archival literature would simply have to be

content with a few uncorrected falsehoods. Note that your

Comment is now 0.90 pages.

21. Resubmit your Comment.

22. Wait two weeks.

23. Receive a response from the journal, stating that your Comment

is 1.07 pages long. Unfortunately, Comments can be no more

than 1.00 pages long, so your Comment cannot be considered

until it is shortened to less than 1.00 pages long.

24. Write to the journal that, in view of the fact that your Comment

is only ever so slightly long, and that it takes quite a while to

resubmit it on the journal’s confusing and dysfunctional web site,

perhaps it could be sent out for review as is and shortened

slightly to 1.00 pages later.

25. Wait a week.

26. Receive a response from the journal, stating that your Comment

is 1.07 pages long. Unfortunately, Comments can be no more

than 1.00 pages long, so your Comment cannot be considered

until it is shortened to less than 1.00 pages long.

27. Shorten your Comment to 0.80 pages, removing such frivolous

linguistic luxuries as adjectives and adverbs.

28. Resubmit your Comment.

29. Wait three months, during which time, answer questions from

numerous competitors regarding the fraudulence of your life’s

work, why you perpetrated such a scam on the scientific

community, and how you got away with it for so long.

30. Read the latest issue of the journal, particularly enjoying an

especially detailed, figure-filled, equation-laden, and

explanation-rich three-page Comment.

31. Receive the reviews of your Comment.

32. Notice that Reviewer #3 likes your Comment, considers it

important that the incorrect paper’s errors be corrected and

recommends publication of your Comment as is.

33. Notice that Reviewer #2 hates your Comment for taking issue

with such a phenomenal paper, which finally debunked such

terrible work as yours, and insists that your Comment not be

published under any circumstances.

34. Notice that Reviewer #1 doesn’t like it either, but considers that

its short length may have prevented him from understanding it.

35. Also receive the topical editor’s response, pointing out that no

decision can be made at this time, but also kindly suggesting

that you consider expanding your Comment to three pages and

resubmitting it along with your responses to the reviews.

36. Expand your Comment back to three pages, replacing adjectives,

adverbs, figures, equations, explanations, and corrections of

author errors you had had to remove earlier to meet the 1.00-

page limit. And, in an attempt to enlighten Reviewers #1 and

#2, include a separate extended response to their reviews.

37. Resubmit your Comment.

38. Wait three months, during which time, receive condolences from

numerous colleagues regarding the fraudulence of your life’s

work and how sorry they are about it having been debunked.

39. Fail to enjoy your colleagues’ stories of other deluded scientists

in history whose work was also eventually debunked, and try to

explain that, in fact, you feel that you don’t actually have that

much in common with alchemists, astrologers, creationists, and

flat-earthers.

40. Read the latest issue of the journal, which includes another

detailed three-page Comment, almost bursting with colorful and

superfluous adjectives and adverbs, some as many as twenty

letters long.

41. Receive the second set of reviews of your Comment.

42. Notice that Reviewer #3 continues to like your Comment and

continues to recommend its publication.

43. Notice that Reviewer #2 continues to hate it for taking issue

with such a phenomenal paper, which finally debunked such

terrible work as yours, and again insists that your worthless

Comment not be published.

44. Note further that Reviewer #2 now adds that your Comment

should under no circumstances be published until you obtain the

important details from the authors that you confessed in your

response to the reviewers you were not able to obtain and are

not ever going to.

45. Realize that Reviewer #2’s final criticism inevitably dooms your

Comment to oblivion until such time as the authors provide you

with the important details, your best estimate for which is never.

46. Notice, however, that Reviewer #1 now sees your point and

now strongly recommends publication of your Comment. He

also strongly recommends that your Comment remain three

pages long, so that other readers can actually understand what

it is that you’re saying.

47. And, in an absolutely stunning turn of events, note also that

Reviewer #1 writes further that he has also somehow secretly

obtained from the authors the important details they neglected

to provide in their paper and refused to send to you. Even

better, using them, he has actually checked the relevant

calculation. And he finds that the authors are wrong, and you

are correct.

48. Realize that it is now no longer necessary to respond to the

impossible criticism of Reviewer #2, as Reviewer #1 has kindly

done this for you.

49. Add a sentence to your Comment thanking Reviewer #1 for his

heroic efforts in obtaining the authors’ important details and for

confirming your calculations.

50. Receive the editor’s decision that your Comment could perhaps

now be published. Unfortunately, Comments can be no more

than 1.00 pages long, so your Comment cannot be considered

further until it is shortened to less than 1.00 pages long.

51. Point out to the editor that most Comments in his journal are

two to three pages long. Furthermore, it was the editor himself

who suggested lengthening it to three pages in the first place.

And Reviewer #1 strongly recommended leaving it that long.

52. Wait a month for a response, during which time, answer

questions from numerous friends regarding the fraudulence of

your life’s work and asking what new field you’re considering

and reminding you of how lucky you are to still have your job.

53. Turn down a friend’s job offer in his brother-in-law’s septic-tank

pumping company.

54. Obtain the latest issue of the journal and enjoy reading yet

another nice lengthy Comment, this one swimming in such

extravagant grammatical constructions as dependent clauses.

55. Receive the editor’s response, apologizing that, unfortunately,

Comments can be no more than 1.00 pages long, so your

Comment cannot be considered further until it is shortened to

less than 1.00 pages long.

56. Download pdf files of all Comments published in the journal in

the past decade, most of which were three pages long. Send

them to the editor, his boss, and his boss’s boss.

57. Receive the editor’s response, apologizing that, unfortunately,

Comments can be no more than 1.00 pages long, so your

Comment cannot be considered further until it is shortened to

less than 1.00 pages long.

58. Shorten your Comment to 0.80 pages, again removing

gratuitous length-increasing luxuries such as figures, equations,

explanations, adjectives, and adverbs. Also again remove your

corrections of some of the authors’ errors.

59. Also, replace extravagant words containing wastefully wide

letters, such as “m” and “w”, with efficient, space-saving words

containing efficient, lean letters, like “i”, “j”, “t”, and “l”. So

what if “global warming” has become “global tilting.”

60. Resubmit your Comment.

61. Wait two weeks.

62. Receive a response from the journal, stating that your Comment

is 1.09 pages long. Unfortunately, Comments can be no more

than 1.00 pages long, so your Comment cannot be considered

further until it is shortened to less than 1.00 pages long.

63. Shorten your Comment by removing such extraneous text as

logical arguments.

64. Also, consider kicking off your coauthor from a different

institution, whose additional address absorbs an entire line of

valuable Comment space. Wonder why you asked him to help

out in the first place.

65. Also, consider performing the necessary legal paperwork to

shorten your last name, which could, as is, extend the author

list to an excessive two lines.

66. Vow that, in the future, you will collaborate only with scientists

with short names (Russians are definitely out).

67. Thank your Chinese grad-student coauthor for having a last

name only two letters long. Make a mental note to include this

important fact in recommendations you will someday write to

her potential employers.

68. Resubmit your Comment.

69. Wait two weeks.

70. Receive a response from the senior editor that you cannot thank

Reviewer #1 for obtaining the missing details and confirming

your results, as this would give the appearance that the journal

was biased in your favor in the Comment review process.

71. Assure the senior editor that, if anyone even considered asking

about this, you would immediately and emphatically confirm

under oath, on a stack of Newton’s Principia Mathematica’s, and

under penalty of torture and death that, in this matter, the

journal was most definitely not biased in your favor in any way,

shape, or form in the current geological epoch or any other and

in this universe or any other, whether real or imagined.

72. Receive a response from the senior editor that you cannot thank

Reviewer #1 for obtaining the missing details and confirming

your results, as this would give the appearance that the journal

was biased in your favor in the Comment review process.

73. Remove mention of Reviewer #1’s having obtained the

necessary details from the acknowledgment, realizing that it’s

probably for the best in the end. If word were to get out that,

in order to do so, he had managed to infiltrate the allegedly

impenetrable ultrahigh-level security of the top-secret United

States government nuclear-weapons lab, where it happens that

the authors worked, he would likely be prosecuted by the

George W. Bush administration for treason. And if he’s

anything like the other scientists you know, he probably

wouldn’t last long in Gitmo.

74. Resubmit your Comment.

75. Wait two weeks.

76. Receive a response from the journal stating that, in your

submitted MS Word file, the references are not double-spaced.

Your Comment cannot be considered for publication until the

references in this document are double-spaced.

77. Add lines between the several references, a process that

requires a total of twelve seconds.

78. Resubmit your Comment, a process that, due to dysfunctional

journal web-site problems, requires a total of three hours.

79. Wait two weeks.

80. Receive a response from the senior editor that, while your

Comment is now short enough and properly formatted, over the

many modifications and shortenings that have occurred, its tone

has become somewhat harsh. For example, a sentence that

originally read, “The authors appear to have perhaps

accidentally utilized an array size that was somewhat

disproportionate for the corresponding and relevant waveform

complexity,” has evolved into: “The authors are wrong.”

81. Have numerous telephone conversations with the senior editor,

in which you overwhelm him with the numerous other issues

you have had to deal with during the Comment evaluation

process until he forgets about your Comment’s tone. Indeed,

compared to your verbal tone during these telephone calls, the

paper’s tone seems downright friendly.

82. Celebrate this minor victory by deciding not to include in the

final draft of the Comment’s Acknowledgments section a

description of certain individuals you’ve encountered during this

process—a description that would have involved such colorful

terms as “bonehead” and “cheese-weenie.”

83. Wonder whether your Comment has finally been sent to the

authors for their Reply, or instead was lost, trashed, or sent

back to the reviewers for further review and possible rejection.

84. Wait four months, during which time, respond to numerous

close relatives regarding the fraudulence of your life’s work and

who remind you that at least you still have your health, albeit in

a noticeably deteriorating state over the past few months. And

perhaps you’d like to join them at the local bar for its daily

Happy Hour.

85. Take them up on their offer, but learn that they expect you to

pay for drinks, which, regrettably, you can’t because sales at

the small company you formed to sell devices based on your

work have fallen to essentially zero.

86. Learn from one of your grad students that a potential employer

asked her, “Hasn’t your work recently been discredited?”

87. Learn that she was not granted an interview.

88. Attend a conference, where a colleague informs you that he is

Reviewer #1. Attempt to hug him, but be advised that a simple

“thank you” for merely doing his job is sufficient.

89. Learn from Reviewer #1 that he has not received the authors’

Reply for review, or any other correspondence from the journal

in the several months since he submitted his review.

90. Realize that you had stopped carefully reading the journal, and,

as a result, had missed the “Erratum” published by the authors

on the paper in question six months earlier, shortly after you

submitted your short-lived three-page version of the Comment.

91. Note that, in this “Erratum,” the authors actually admitted no

errors and instead reported new—similarly incorrect—numbers,

which they concluded “do not change any conclusions” in their

original paper.

92. Feel old, as you can remember the days when Errata involved

correcting old errors and not introducing new ones.

93. Note also that, in their “Erratum,” the authors have actually

responded to some highly specific criticisms of their errors you

mentioned in the three-page version of your Comment—

criticisms that you had removed when shortening it to meet the

journal’s strict 1.00-page limit. Criticisms the authors couldn’t

possibly have known about in view of the journal’s strict

confidentiality rules for submitted papers, unless this version of

your Comment was somehow leaked to them...

94. Realize that, with this “Erratum,” the authors have effectively

already published their “Reply” to your Comment.

95. Note also that, while your Comment has been kicking around for

close to a year, its publication date nowhere in sight, the

authors’ “Erratum” was published in a mere nineteen days.

96. With two mathematical mistakes by the authors to consider now

and plenty of time in which to consider them, realize that their

main mathematical error was simply to forget to take the

square root when computing the “root-mean-square”—a childish

mistake.

97. Note that this is consistent with the fact that, on both their

paper and “Erratum,” one of the authors’ names is misspelled.

This is consistent with the fact that, by now, you’ve already

spent approximately 100 times as much time correcting their

errors than they spent making them.

98. Realize that you must now modify your Comment to also include

a discussion of the “Erratum.” Ask the editor if you can do this.

99. Receive a response from the editor that, after much discussion

among the journal editors, it has been decided that, yes, you

can do this.

100. Include a couple of short sentences debunking the “Erratum” in

your Comment, using up two valuable lines of text and three

valuable lines in the reference list due to its rather long title.

101. Realize that your Comment is now several lines longer than the

do-or-die 1.00-page limit.

102. Shorten your Comment by omitting noncritical words like “a,”

“an,” and “the,” giving your Comment exotic foreign feel.

103. Also, take advantage of the fact that, in some literary circles,

sentence fragments are considered acceptable. Decide that,

indeed, verbs are highly over-rated.

104. Declare “death to all commas”—a worthless piece of

unnecessary punctuation if ever there was one.

105. Consider using txt msg shorthand 4 actual words 2 further

shorten ur Comment, but decide not 2 when u realize that the

hundreds of frowny-face emoticons u couldn’t resist adding

actually lengthened ur Comment 2 2 pages :(

106. Resubmit your Comment.

107. Realize that modifying your Comment to include the “Erratum”

has now, unfortunately, opened it up for additional criticism

from the editors and possibly the reviewers.

108. Receive a phone call from the senior editor, who takes

advantage of this opportunity. He has suddenly remembered

that your Comment’s tone is a bit harsh. He is concerned that

the authors, who appear to be highly motivated and quite crafty,

will complain loudly and aggressively about the obviously

preferential treatment your Comment is clearly receiving from

the journal and make his life miserable. He objects to nearly

every sentence in your Comment, in each case, insisting on a

considerably longer sentence. He insists that you not say that

the authors are “wrong” and suggests instead “perhaps

mistaken.” He also insists on replacing the word “so” with the

unforgivably long “therefore.”

109. Realize that, if you accede to his demands, your Comment will

be an unacceptable 1.2 pages long, dooming your Comment to

oblivion.

110. Also learn from the senior editor that you cannot thank

Reviewer #1 even for simply “confirming your calculations,” as

this would also reveal the obvious preferential treatment your

Comment has clearly received from the journal.

111. Explain that this is a common type of acknowledgment,

revealing no preferential treatment by the journal whatsoever,

and send him a copy of a recent paper from his journal in which

the authors thank a reviewer for actually proving several

theorems for them.

112. Learn from the senior editor that another reason that you

cannot thank Reviewer #1 is that there is no record of Reviewer

#1 actually having confirmed your calculations. Apparently, the

paper on which it was printed has, over the eons, turned to dust.

113. Send a copy of the email from the journal containing Reviewer

#1’s review to the senior editor.

114. Also, offer to put the senior editor in touch with Reviewer #1, in

case all records of Reviewer #1’s identity have also been lost.

115. Also, learn from the senior editor that he admits no expertise in

your field but that he will nevertheless not allow you to say in

your Comment that the approach that you proved twenty years

earlier is “fundamentally impossible” is “fundamentally

impossible.” Instead, you must say that it “has not been shown

to be possible.”

116. Note that, if this could accurately be said about perpetualmotion

machines, it would rekindle interest in that long

forgotten field.

117. Receive no response.

118. Realize that this is probably good news.

119. Encounter a journal representative at a conference, who kindly

mentions that the one-page version of your Comment was, in

fact, sent to the authors for their Reply. And, after a series of

delays, they have submitted it. But, unfortunately, it is extremely

contentious and will be rejected unless toned down significantly.

It’s as if, for some reason, they want it to be rejected.

120. In preparation for the final phase of the Comment process, write

to the editor asking if you will be able to see the Reply to your

Comment and make minor modifications in view of it, as allowed

by most journals.

121. For once, obtain a quick response: “No.”

122. Finally receive notice from the editor that the authors’ official

Reply to your Comment has been reviewed and processed.

Unfortunately, it was not found suitable for publication and so

was rejected. And because, for maximum reader enjoyment, it

is the policy of this journal that a Comment cannot be published

without a Reply, your Comment cannot be published. This

decision is final.

123. Be advised that the journal thanks you for submitting your

Comment, and you should feel free to submit a paper on a

different subject in the future, as this journal features the most

rapid publication of any journal in this field.

Addendum: This ridiculous scenario actually occurred as written; I

didn’t make it up. I confess that, of course, I exaggerated the

responses from competitors, colleagues, friends, relatives, and myself,

but not those of the journal editors or the authors. Those events all

happened exactly as I’ve described them.

The fate described in the last two steps actually occurred to a

different Comment, which I submitted to a different journal a few

years earlier, and which, in fact, never was published, precisely for the

absurd reason given.

Over a year after submitting the Comment discussed in all the other

steps, realizing that it was clearly doomed to oblivion, I sent a copy of

this story to the senior editor’s boss. Shortly afterward, I received a

call from the senior editor, who had suddenly withdrawn all of his

objections. The Comment was fine as it was, and it would be

published!

However, I was still not allowed to see the authors’ Reply until it

was actually in print. And when it appeared, it reiterated the same

erroneous claims and numbers (for the third time!) and then

introduced a few new erroneous claims, which, of course, I am not

allowed to respond to. So I’ve simply given up.

I’ve withheld the names of the various individuals in this story

because my purpose is not to make accusations (as much as I would

like to; they’re certainly deserved), but instead to effect some social

change. Nearly everyone I’ve encountered who has written a

Comment has found the system to be heavily biased against wellintentioned

correcting of errors—often serious ones—in the archival

literature. I find this quite disturbing.

And would it have killed these authors to email me their “results”

prior to publishing them, so I could’ve enlightened them before they

committed themselves to their errors in print, thus avoiding all this

pain?

Finally, I should also mention that, to keep this story light and at

least somewhat entertaining, I actually simplified it somewhat,

omitting numerous additional steps involving journal web-site crashes,

undelivered emails, unreturned phone calls to dysfunctional pagers,

complaints to higher levels of journal management, and some rather

disturbing (and decidedly unfunny) behavior by the authors and

certain editors.

After all, I wouldn’t want to discourage you from submitting a

Comment.

______________________________

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